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Friday, April 1
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1:00 - 1:15 |
Welcome & Introductory Remarks |
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Sequence Based Genome Analysis |
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Plenary Speaker |
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1:15 - 2:00 |
Boltzman
Weighted Ensembles of RNA Secondary
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Charles (Chip) E. Lawrence |
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Structures
and the Curse of Dimensionality |
Center for Computational Molecular Biology |
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Division of Applied Mathematics |
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Brown University |
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2:00 - 2:45 |
Computational
Prediction of Regulatory Elements in DNA |
Martin Tompa |
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by
Comparative Sequence Analysis
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Computer Science and Engineering |
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Univ. of Washington |
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2:45 - 3:00 |
Break |
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3:00 - 3:45 |
Coding
SNPs, evolution and disease phenotype:
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Paul D. Thomas |
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genome-wide
bioinformatics predictions and
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Applied Biosystems |
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experimental
functional studies |
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3:45 - 4:00 |
Quantitative
Analysis of Experimental Binding Affinities of 126 DNA- |
Derek Cashman |
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Binding
Compounds versus 13 Nucleic Acid Sequences to Investigate Specificity |
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4:00 - 4:15 |
MPrime:
Efficient Large Scale Multiple Primer and Oligonucleotide Design for |
Eric Rouchka |
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Customized
Gene Microarrays |
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4:15 - 4:30 |
Exon signal
enhancers finding through phylogenetic footprinting |
Stefan Kirov |
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4:30 - 4:45 |
RepeatAssembler:
A Package for Annotation of Full-length Repetitive DNA |
Mark Farman |
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Sequences
in Fungal Genomes |
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Weixi Li |
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4:45 - 5:00 |
TERMINUS:
Telomeric End Reads Mining In Unassembled Sequences |
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5:00 - 6:00 |
Reception |
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6:00 - 7:00 |
Dinner |
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7:00 - 8:00 |
Challenges
in Genome Annotation and Data Integration |
Richard J. Mural |
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Director, Scientific Analysis |
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Celera Genomics |
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Saturday, April 2
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8:30 - 9:00 |
Breakfast at Conference Center |
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Combinatorial Algorithms |
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Plenary Speaker |
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9:00 - 9:45 |
Phylogenetic
Networks with Constrained and Unconstrained Recombination |
Dan Gusfield |
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UC Davis |
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9:45 - 10:00 |
Fusion
of Multiple Decision Models in Proteomic Biomarker Discovery |
A.S. Thomas |
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10:00 - 10:15 |
Using
Domination Numbers in Trees to Analyze Secondary RNA Structure |
Debra Knisley |
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10:15 - 10:30 |
Transcriptome-QTL
analysis of correlated CNS transcripts in WebQTL |
Elissa Chesler |
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reveals major genetic variation in synaptic vesicle related gene expression |
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10:30 - 10:45 |
Break |
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10:45 - 11:00 |
Literature
Based Functional Analysis of Microarray Data |
Ramin Homayouni |
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11:00 - 11:15 |
Identifying
candidate genes for nicotine addiction by combining data |
Hao Chen |
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and text-mining
approaches |
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11:15 - 11:30 |
Detection
of Network Motifs in Large Biological Databases |
Xinxia Peng |
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11:30 - 11:45 |
Gene Expression
Data from Correlation to Cluster Processing using |
John Scharff |
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Low-Dose
IR Data for Illustration |
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12:00 - 1:00 |
Lunch |
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1:00 - 4:00 |
Free time |
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4:00 - 6:00 |
Poster session/Reception |
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6:00 - 7:00 |
Dinner in resort dining room |
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Workshops, special interest group meetings |
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7:00 - 8:00 |
Education Training in Bioinformatics |
Jay Snoddy, Mike Langston |
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Rudy Parrish |
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8:30 - 10:00 |
Web QTL Update |
Rob Williams, Ken Manly |
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Elissa Chesler |
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Sunday, April 3 |
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8:30 - 9:00
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Breakfast in Conference Center |
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Gene Expression, Visualization, and the Big-Picture Synthesis |
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Plenary Speaker |
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9:00 - 9:45 |
The
organisation of synaptic function - a proteomic and informatic analysis |
Andrew Pocklington |
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Institute for Adaptive and
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Neural Computation |
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University of Edinburgh, UK |
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9:45 - 10:30 |
Genomic Complexity from Large Scale EST Projects: |
Jean Thierry-Mieg |
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AceView and beyond |
NIH |
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National Center for
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Biotechnology Information |
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10:30 - 10:45 |
Microarray
Analysis of Gene Expression in the Kidney Glomeruli of Diabetic |
Suzana Brozovic |
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OVE 26
mice |
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10:45 - 11:00 |
Gene-Expression
Analysis for CodeLink Whole Human Genome Microarray |
Abdelnaby Khalyfa |
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Using
Olfactory Neuroepithelium-Derived Progenitors |
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11:00 - 11:15 |
Exploring
gene sets and networks within biological contexts |
Bing Zhang |
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11:15 - 11:30 |
The Cerebellar
Gene Expression Database (CGED): Building a community |
Doug Swanson |
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resource
for exploring genetic networks regulating cerebellar development. |
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